miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125483186|gb|EL511969.1|EL511969 AAATGGCGAAAATTCAAATTCTTACTTAGTATTCCTTTTGCTCGTCTTTGTTGTTGCAATCTCAGATATTGCGACAGTCA
ATGGACAAATATGTGAAAAACCGAGTAAGACTTGGTTTGGAAACTGCAAAGACACAGATAAGTGTGACAAGCGGTGTATA
GATTGGGAGGGTGCAAAGCATGGAGCTTGTCATCAACGTGAAGCCAAACACATGTGCTTTTGCTACTTTAATTGTGATCC
CGAGAAGAATCCAGGGCCACCACCAGGGGCACCGGGGACGCCAGGGACGCCTCCTGCTCCTCCAGGAAAGGGCGAAGGAG
ATGCTCCTCATCCTCCTCCTACTCCAAGTCCTCCTGGAGGTGATGGAGGCAGTGAACCAGCTCCTCCTCCCGCAGGTGGT
GGAGCTCCTCCTCCTGCAGGTGGTGAAGGAGGCGGAGCACCACCACCAGGTGCTTAGGCGAGAAAGAGCCAAAGTCTTGA
ATAGAAAACTTTATACATATGATTATGAATAAGGAGAACATATATGCTTACATATTGAAATTAATTTAGTTTGCATGTGT
AATAAAACCTCATGAGTTCAATTATAAGTTTATAATAAATTTACATGTATAAAGTCCAAAC




Most similar to sp|P22357|SF18_HELAN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8S9S4|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza
           sativa subsp. japonica GN=ILL1 PE=2 SV=1
          Length = 442

 Score =  121 bits (303), Expect(2) = 1e-29
 Identities = 67/109 (61%), Positives = 73/109 (66%)
 Frame = +3

Query: 102 LTVLAATVSPSLAAGPPVLQDPAELLRLAKEPAFADWMVGVRRRIHENPELGYEEFQTSE 281
           + VLAA ++   A     L DPA LLR AKE  FA WMVG+RRRIHENPELGYEEF TSE
Sbjct: 14  VAVLAAALAGCGAGA--ALDDPAGLLRRAKEAEFAGWMVGLRRRIHENPELGYEEFATSE 71

Query: 282 LVRRELDAMGIPYRHXXXXXXXXXXXXXXXXXXXALRADMDALPLQESV 428
           LVRRELDA+GIPYRH                   ALRADMDALP+QESV
Sbjct: 72  LVRRELDALGIPYRHPFAVTGVVATVGTGGPPFVALRADMDALPMQESV 120



 Score = 29.3 bits (64), Expect(2) = 1e-29
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 412 PCRKVWEWEHKSKAPGK 462
           P ++  EWEHKSK PGK
Sbjct: 115 PMQESVEWEHKSKVPGK 131


>sp|Q84XG9|ILL1_ORYSI IAA-amino acid hydrolase ILR1-like 1 OS=Oryza
           sativa subsp. indica GN=ILL1 PE=2 SV=1
          Length = 442

 Score =  121 bits (303), Expect(2) = 1e-29
 Identities = 67/109 (61%), Positives = 73/109 (66%)
 Frame = +3

Query: 102 LTVLAATVSPSLAAGPPVLQDPAELLRLAKEPAFADWMVGVRRRIHENPELGYEEFQTSE 281
           + VLAA ++   A     L DPA LLR AKE  FA WMVG+RRRIHENPELGYEEF TSE
Sbjct: 14  VAVLAAALAGCGAGA--ALDDPAGLLRRAKEAEFAGWMVGLRRRIHENPELGYEEFATSE 71

Query: 282 LVRRELDAMGIPYRHXXXXXXXXXXXXXXXXXXXALRADMDALPLQESV 428
           LVRRELDA+GIPYRH                   ALRADMDALP+QESV
Sbjct: 72  LVRRELDALGIPYRHPFAVTGVVATVGTGGPPFVALRADMDALPMQESV 120



 Score = 29.3 bits (64), Expect(2) = 1e-29
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 412 PCRKVWEWEHKSKAPGK 462
           P ++  EWEHKSK PGK
Sbjct: 115 PMQESVEWEHKSKVPGK 131


>sp|Q9SWX9|ILL5_ARATH IAA-amino acid hydrolase ILR1-like 5
           OS=Arabidopsis thaliana GN=ILL5 PE=3 SV=1
          Length = 435

 Score = 96.7 bits (239), Expect(2) = 1e-22
 Identities = 49/90 (54%), Positives = 57/90 (63%)
 Frame = +3

Query: 159 QDPAELLRLAKEPAFADWMVGVRRRIHENPELGYEEFQTSELVRRELDAMGIPYRHXXXX 338
           Q P   L LAK   F DWMVG+RRRIHENPELGYEE +TS+LV+ ELD MG+ Y++    
Sbjct: 30  QIPKNFLSLAKREDFFDWMVGIRRRIHENPELGYEEVETSKLVKTELDKMGVSYKNPVAV 89

Query: 339 XXXXXXXXXXXXXXXALRADMDALPLQESV 428
                          ALRADMDALP+QE V
Sbjct: 90  TGVIGYVGTGHAPFVALRADMDALPIQEMV 119



 Score = 30.4 bits (67), Expect(2) = 1e-22
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 412 PCRKVWEWEHKSKAPGKDAWEVGHGSTMFANAGWGICLKNPSREPSG 552
           P +++ EWEHKSK PGK     GH +      G    LK    E  G
Sbjct: 114 PIQEMVEWEHKSKIPGK-MHACGHDAHTTMLLGAAKLLKEHQEELQG 159


>sp|O04373|ILL4_ARATH IAA-amino acid hydrolase ILR1-like 4
           OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2
          Length = 440

 Score = 94.4 bits (233), Expect(2) = 2e-21
 Identities = 48/90 (53%), Positives = 58/90 (64%)
 Frame = +3

Query: 159 QDPAELLRLAKEPAFADWMVGVRRRIHENPELGYEEFQTSELVRRELDAMGIPYRHXXXX 338
           Q P++ L LAK   F DWMVG+RRRIHENPELGYEE +TS+LVR EL+ MG+ Y++    
Sbjct: 30  QIPSKFLTLAKRNDFFDWMVGIRRRIHENPELGYEEVETSKLVRAELEKMGVSYKYPVAV 89

Query: 339 XXXXXXXXXXXXXXXALRADMDALPLQESV 428
                          ALRADMDAL +QE V
Sbjct: 90  TGVVGYVGTGHAPFVALRADMDALAMQEMV 119



 Score = 28.5 bits (62), Expect(2) = 2e-21
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = +1

Query: 430 EWEHKSKAPGKDAWEVGHGSTMFANAGWGICLKNPSREPSG 552
           EWEHKSK PGK     GH +      G    LK    E  G
Sbjct: 120 EWEHKSKVPGK-MHACGHDAHTTMLLGAAKLLKEHEEELQG 159


BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P22357|SF18_HELAN Anther-specific protein SF18 (Fragment)
           OS=Helianthus annuus PE=2 SV=1
          Length = 161

 Score =  142 bits (357), Expect = 2e-33
 Identities = 59/61 (96%), Positives = 61/61 (100%)
 Frame = +2

Query: 56  AISDIATVNGQICEKPSKTWFGNCKDTDKCDKRCIDWEGAKHGACHQREAKHMCFCYFNC 235
           AISDIATVNG+ICEKPSKTWFGNCKDTDKCDKRCIDWEGAKHGACHQREAKHMCFCYF+C
Sbjct: 6   AISDIATVNGKICEKPSKTWFGNCKDTDKCDKRCIDWEGAKHGACHQREAKHMCFCYFDC 65

Query: 236 D 238
           D
Sbjct: 66  D 66